BLAST Results
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Job title: Nucleotide Sequence (27 letters)

RID
UH6A8CBN014 (Expires on 09-25 15:59 pm)
Query ID
lcl|Query_50255
Description
None
Molecule type
nucleic acid
Query Length
27
Database Name
RefSeq RNA
Description
Mus musculus RefSeq RNA
Program
BLASTN 2.8.0+

Search Parameters
Search parameter name
Search parameter value
Programblastn
Word size7
Expect value1000
Hitlist size100
Match/Mismatch scores1,-3
Gapcosts5,2
Filter string F
Genetic Code1
Database
Database parameter name
Database parameter value
Posted dateSep 21, 2018 10:54 PM
Number of letters122,375,531
Number of sequences41,358
Entrez query
Excludes: models (XM/XP)
Karlin-Altschul statistics
Params
Ungapped
Gapped
Lambda1.374061.37406
K0.7106030.710603
H1.307251.30725
Results Statistics
Results Statistics parameter name
Results Statistics parameter value
Length adjustment 15
Effective length of query 12
Effective length of database 121755161
Effective search space 1461061932
Effective search space used 1461061932

Alignments

GenBankGraphics Next Previous Descriptions
Mus musculus THAP domain containing, apoptosis associated protein 1 (Thap1), mRNA
NM_199042.222671
Gene-associated gene details
UniGene-clustered expressed sequence tags
GEO Profiles-microarray expression data
NewGenome Data Viewer-aligned genomic context
Alignment statistics for match #1
ScoreExpectIdentitiesGapsStrandFrame
54.0 bits(27) 8e-08() 27/27(100%) 0/27(0%) Plus/Plus
Query  1    ATGGTGCAGTCCTGCTCCGCCTACGGC  27
            |||||||||||||||||||||||||||
Sbjct  283  ATGGTGCAGTCCTGCTCCGCCTACGGC  309


GenBankGraphics Next Previous Descriptions
Mus musculus choline dehydrogenase (Chdh), transcript variant 1, mRNA
NM_001136240.156521
Gene-associated gene details
UniGene-clustered expressed sequence tags
GEO Profiles-microarray expression data
NewGenome Data Viewer-aligned genomic context
Alignment statistics for match #1
ScoreExpectIdentitiesGapsStrandFrame
32.2 bits(16) 0.29() 16/16(100%) 0/16(0%) Plus/Plus
Query  1     ATGGTGCAGTCCTGCT  16
             ||||||||||||||||
Sbjct  3970  ATGGTGCAGTCCTGCT  3985


GenBankGraphics Next Previous Descriptions
Mus musculus choline dehydrogenase (Chdh), transcript variant 3, mRNA
NM_172264.254501
Gene-associated gene details
UniGene-clustered expressed sequence tags
GEO Profiles-microarray expression data
NewGenome Data Viewer-aligned genomic context
Alignment statistics for match #1
ScoreExpectIdentitiesGapsStrandFrame
32.2 bits(16) 0.29() 16/16(100%) 0/16(0%) Plus/Plus
Query  1     ATGGTGCAGTCCTGCT  16
             ||||||||||||||||
Sbjct  3768  ATGGTGCAGTCCTGCT  3783


GenBankGraphics Next Previous Descriptions
Mus musculus choline dehydrogenase (Chdh), transcript variant 2, mRNA
NM_175343.556251
Gene-associated gene details
UniGene-clustered expressed sequence tags
GEO Profiles-microarray expression data
NewGenome Data Viewer-aligned genomic context
Alignment statistics for match #1
ScoreExpectIdentitiesGapsStrandFrame
32.2 bits(16) 0.29() 16/16(100%) 0/16(0%) Plus/Plus
Query  1     ATGGTGCAGTCCTGCT  16
             ||||||||||||||||
Sbjct  3943  ATGGTGCAGTCCTGCT  3958


GenBankGraphics Next Previous Descriptions
Mus musculus potassium voltage-gated channel, shaker-related subfamily, member 2 (Kcna2), mRNA
NM_008417.5115821
Gene-associated gene details
UniGene-clustered expressed sequence tags
GEO Profiles-microarray expression data
NewGenome Data Viewer-aligned genomic context
Alignment statistics for match #1
ScoreExpectIdentitiesGapsStrandFrame
30.2 bits(15) 1.2() 15/15(100%) 0/15(0%) Plus/Minus
Query  8      AGTCCTGCTCCGCCT  22
              |||||||||||||||
Sbjct  11170  AGTCCTGCTCCGCCT  11156



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